PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8626g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 311aa    MW: 35307.8 Da    PI: 7.1666
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8626g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.2e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed +l ++++ +G g W+ I+++ g++R++k+c++rw++yl
     MA_8626g0010 14 RGAWTAMEDVILSRYIRIHGDGGWRNIPKRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP

2Myb_DNA-binding538.1e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ +++E+el+++++++lG++ W++Ia +++ gRt++++k++w+++
     MA_8626g0010  67 RGNISPDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      7899******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.052961IPR017930Myb domain
SuperFamilySSF466893.29E-2712108IPR009057Homeodomain-like
SMARTSM007175.2E-121363IPR001005SANT/Myb domain
PfamPF002493.8E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-211568IPR009057Homeodomain-like
CDDcd001673.11E-91661No hitNo description
PROSITE profilePS5129426.56162116IPR017930Myb domain
SMARTSM007174.8E-1666114IPR001005SANT/Myb domain
PfamPF002494.1E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2569116IPR009057Homeodomain-like
CDDcd001671.24E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGRSPCPSKE ELSRGAWTAM EDVILSRYIR IHGDGGWRNI PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT HISKKLRLSK  120
SESLHKSSQI FNRSSKSAVP VQNRVFKATA VKITTAVRHS EMVRPNDCKG DGCSKLFSDE  180
AFKFCNVKET RKSSWPDLLV NDSIVDEESE RIGFAMAVNL AETAATISTS SFSCLGDQQS  240
PHYDNFAEDS ATLDENILYL NELLLPECNL LPSPSDCSTD FASEEFYGGI EGLYDNAQHV  300
DWIHEFDYLQ K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-231111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024611.11e-72Duplicated homeodomain-like superfamily protein, putative
SwissprotQ9S9K91e-60MYB3_ARATH; Transcription factor MYB3
TrEMBLB8LMJ61e-147B8LMJ6_PICSI; Putative uncharacterized protein
STRINGGLYMA13G16890.12e-68(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-50myb domain protein 3